Condensed Matter Physics, 2016, vol. 19, No. 2, 23802
The contribution of electrostatic interactions to the collapse of oligoglycine in water
(Structural and Computational Biology and Molecular Biophysics, Baylor College of Medicine, Houston, TX 77030, USA)
(Structural and Computational Biology and Molecular Biophysics, Baylor College of Medicine, Houston, TX 77030, USA;
Sealy Center for Structural Biology and Molecular Biophysics, Department of Biochemistry and Molecular Biology, University of Texas Medical Branch, 301 University Blvd., Galveston, TX 77555-0304, USA)
Protein solubility and conformational stability are a result of a balance of interactions both within a protein and between protein and solvent.
The electrostatic solvation free energy of oligoglycines, models for the peptide backbone, becomes more favorable with an increasing length, yet longer
peptides collapse due to the formation of favorable intrapeptide interactions between CO dipoles, in some cases without hydrogen bonds. The strongly repulsive solvent
cavity formation is balanced by van der Waals attractions and electrostatic contributions. In order to investigate the competition between solvent exclusion and
charge interactions we simulate the collapse of a long oligoglycine comprised of 15 residues while scaling the charges on the peptide from zero to fully charged.
We examine the effect this has on the conformational properties of the peptide. We also describe the approximate thermodynamic changes that occur during the scaling
both in terms of intrapeptide potentials and peptide-water potentials, and estimate the electrostatic solvation free energy of the system.
hydration free energy, oligoglycine collapse
87.15.ap, 87.10.E-, 87.15.Cc